I don't understand what is going on with this but:
If I create an article in one of my categories and publish it then JoomSEF correctly creates a SEF URL based on the articles name and section.
However, if I also set the article to appear on the front page then I find that the intro appears as it should but when I click on the Read More link I get a 404 because the URL is now something like:
http://www.mydomain.com/section/index.phpcategory/article.html
Basically an index.php is being added to the URL which is not correct and I can't work out why or where it's coming from.
In order to get it to work I'm having to add a redirect permanent command in my .htaccess file
Any ideas?